Research workbench
Crystals structure of classical swine fever virus NS5B (residues 91- 694)
Analyse Crystals structure of classical swine fever virus NS5B (residues 91- 694) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EKJ
- Type
- protein
- Length
- 564 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Classical swine fever virus NS5B
- UniProt
- Q5U8X5
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Classical swine fever virus NS5B | protein | 564 | 44% helix, 13% strand | Q5U8X5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1005 | 0.79 | 0.80 | 91 | empty |
| 2 | 94 | 0.42 | 0.77 | 14 | empty |
| 3 | 69 | 0.32 | 0.75 | 20 | empty |
| 4 | 56 | 0.30 | 0.75 | 14 | empty |
Compared structures
- 7EKJ · Crystals structure of classical swine fever virus NS5B (residues 91-694) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5U8X5
- Elsewhere: RCSB PDB 7EKJ · PDBe 7EKJ · UniProt Q5U8X5
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