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Gnra tetraloop receptor motif composed of RNA and DNA

Analyse Gnra tetraloop receptor motif composed of RNA and DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7EI6
Type: RNA
Length: 35 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA/RNA (35-mer)
Ligands: IR3
Pockets: 2 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA/RNA (35-mer)	rna	35	—	—

Ligands and binding sites

IR3 · Iridium (III) ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	163	0.39	0.73	15	IR3
2	53	0.23	0.72	11	empty

Compared structures

7EI6 · GNRA tetraloop receptor motif composed of RNA and DNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7EI6 · PDBe 7EI6

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