Research workbench
Levansucrase from brenneria sp. enid 312 at 1.33 ångströms resolution
Analyse Levansucrase from brenneria sp. enid 312 at 1.33 ångströms resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EHR
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Levansucrase
- EC
- 2.4.1.10
- UniProt
- G7LSK3
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Levansucrase (EC 2.4.1.10) | protein | 417 | 7% helix, 46% strand | G7LSK3 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 4 copies · chains A
- GOL · Glycerol · additive · 5 copies · chains A
- PGE · Triethylene glycol · additive · 4 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
- 1PE · Pentaethylene glycol · additive · chains A
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.54 | 0.77 | 36 | 1PE, GOL |
| 2 | 83 | 0.34 | 0.75 | 20 | empty |
Compared structures
- 7EHR · Levansucrase from Brenneria sp. EniD 312 at 1.33 angstroms resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G7LSK3
- Elsewhere: RCSB PDB 7EHR · PDBe 7EHR · UniProt G7LSK3
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