Research workbench
Crystal structure of the flagellar hook cap from salmonella enterica serovar typhimurium
Analyse Crystal structure of the flagellar hook cap from salmonella enterica serovar… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EHA
- Type
- protein
- Length
- 824 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Basal-body rod modification protein flgd
- UniProt
- P0A1I9
- Pockets
- 9 · best druggability 0.79
Structure
x-ray diffraction · 5 distinct chains · 22% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Basal-body rod modification protein flgd | protein | 177 | 24% helix, 41% strand | P0A1I9 |
| B | Basal-body rod modification protein flgd | protein | 165 | 22% helix, 41% strand | P0A1I9 |
| C | Basal-body rod modification protein flgd | protein | 162 | 23% helix, 42% strand | P0A1I9 |
| D | Basal-body rod modification protein flgd | protein | 154 | 20% helix, 36% strand | P0A1I9 |
| E | Basal-body rod modification protein flgd | protein | 166 | 19% helix, 45% strand | P0A1I9 |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1010 | 0.79 | 0.81 | 57 | empty |
| 2 | 258 | 0.65 | 0.82 | 36 | empty |
| 3 | 86 | 0.59 | 0.88 | 22 | empty |
| 4 | 125 | 0.55 | 0.83 | 21 | empty |
| 5 | 280 | 0.52 | 0.74 | 30 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1116 Ų buried · 14 hydrogen bonds · protein-protein
- D–E · 925 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 889 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 706 Ų buried · 7 hydrogen bonds · protein-protein
- A–E · 617 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7EHA · Crystal structure of the flagellar hook cap from Salmonella enterica serovar Typhimurium · the same entry in another collection · chain E against E, TM-score 1.00
- P0A1I9 · AlphaFold monomer V2.0 prediction for basal-body rod modification protein flgd (P0A1I9) · a predicted model of the same protein · chain C against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A1I9
- Elsewhere: RCSB PDB 7EHA · PDBe 7EHA · UniProt P0A1I9
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