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Crystal structure of the flagellar hook cap fragment from salmonella enterica serovar typhimurium

Analyse Crystal structure of the flagellar hook cap fragment from salmonella enterica… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7EH9
Type: protein
Length: 268 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Basal-body rod modification protein flgd
UniProt: P0A1I9
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Basal-body rod modification protein flgd	protein	132	8% helix, 48% strand	P0A1I9
B	Basal-body rod modification protein flgd	protein	136	7% helix, 50% strand	P0A1I9

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	188	0.53	0.79	37	empty

Interfaces

1 interface between chains.

A–B · 538 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

7EH9 · Crystal structure of the flagellar hook cap fragment from Salmonella enterica serovar… · the same entry in another collection · chain A against A, TM-score 1.00
P0A1I9 · AlphaFold monomer V2.0 prediction for basal-body rod modification protein flgd (P0A1I9) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A1I9
Elsewhere: RCSB PDB 7EH9 · PDBe 7EH9 · UniProt P0A1I9

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