Research workbench

Synechocystis GUN4 in complex with biliverdin ixa

Analyse Synechocystis GUN4 in complex with biliverdin ixa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7E2S
Type: protein
Length: 233 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: YCF53-like protein
UniProt: P72583
Ligands: BLA
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	YCF53-like protein	protein	233	58% helix, 2% strand	P72583

Ligands and binding sites

BLA · Biliverdine IX alpha · ligand · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	220	0.66	0.84	30	BLA

Compared structures

7E2S · Synechocystis GUN4 in complex with biliverdin IXa · the same entry in another collection · chain A against A, TM-score 1.00
P72583 · AlphaFold monomer V2.0 prediction for YCF53-like protein (P72583) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P72583
Elsewhere: RCSB PDB 7E2S · PDBe 7E2S · UniProt P72583

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.