Research workbench
The ligand-free structure of arabidopsis thaliana GUN4
Analyse The ligand-free structure of arabidopsis thaliana GUN4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E2R
- Type
- protein
- Length
- 290 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tetrapyrrole-binding protein, chloroplastic
- UniProt
- Q9LX31
- Pockets
- 5 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 53% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tetrapyrrole-binding protein, chloroplastic | protein | 141 | 55% helix, 0% strand | Q9LX31 |
| B | Tetrapyrrole-binding protein, chloroplastic | protein | 149 | 52% helix, 0% strand | Q9LX31 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.84 | 0.94 | 45 | empty |
| 2 | 68 | 0.41 | 0.80 | 18 | empty |
| 3 | 52 | 0.36 | 0.79 | 13 | empty |
| 4 | 67 | 0.35 | 0.77 | 16 | empty |
| 5 | 84 | 0.32 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1599 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 7E2R · The ligand-free structure of Arabidopsis thaliana GUN4 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LX31 · AlphaFold monomer V2.0 prediction for tetrapyrrole-binding protein, chloroplastic (Q9LX31) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LX31
- Elsewhere: RCSB PDB 7E2R · PDBe 7E2R · UniProt Q9LX31
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