Research workbench
Gdpd from pyrococcus furiosus dsm 3638
Analyse Gdpd from pyrococcus furiosus dsm 3638 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E0V
- Type
- protein
- Length
- 504 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycerophosphodiester phosphodiesterase
- UniProt
- Q8TZI9
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerophosphodiester phosphodiesterase | protein | 251 | 39% helix, 18% strand | Q8TZI9 |
| C | Glycerophosphodiester phosphodiesterase | protein | 253 | 39% helix, 19% strand | Q8TZI9 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.57 | 0.84 | 20 | empty |
| 2 | 120 | 0.55 | 0.82 | 20 | empty |
Compared structures
- 7E0V · GDPD from Pyrococcus furiosus DSM 3638 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TZI9
- Elsewhere: RCSB PDB 7E0V · PDBe 7E0V · UniProt Q8TZI9
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