Research workbench
Trans-3/4-proline-hydroxylase H11 with 3-hydroxyl-proline
Analyse Trans-3/4-proline-hydroxylase H11 with 3-hydroxyl-proline in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E09
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phytanoyl-CoA dioxygenase
- UniProt
- S5TUM1
- Ligands
- HY3
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phytanoyl-CoA dioxygenase | protein | 262 | 27% helix, 23% strand | S5TUM1 |
Ligands and binding sites
- HY3 · 3-hydroxyproline · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.78 | 0.97 | 26 | HY3 |
| 2 | 136 | 0.44 | 0.76 | 13 | empty |
| 3 | 61 | 0.39 | 0.80 | 15 | empty |
| 4 | 73 | 0.35 | 0.76 | 15 | empty |
Compared structures
- 7E09 · Trans-3/4-proline-hydroxylase H11 with 3-hydroxyl-proline · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S5TUM1
- Elsewhere: RCSB PDB 7E09 · PDBe 7E09 · UniProt S5TUM1
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