Research workbench
Trans-3/4-proline-hydroxylase H11 apo structure
Analyse Trans-3/4-proline-hydroxylase H11 apo structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E05
- Type
- protein
- Length
- 526 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phytanoyl-CoA dioxygenase
- UniProt
- S5TUM1
- Pockets
- 8 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phytanoyl-CoA dioxygenase | protein | 264 | 25% helix, 24% strand | S5TUM1 |
| B | Phytanoyl-CoA dioxygenase | protein | 262 | 26% helix, 21% strand | S5TUM1 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 246 | 0.62 | 0.81 | 28 | empty |
| 2 | 95 | 0.58 | 0.86 | 19 | empty |
| 3 | 204 | 0.52 | 0.77 | 26 | empty |
| 4 | 197 | 0.52 | 0.77 | 23 | empty |
| 5 | 52 | 0.48 | 0.86 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 828 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 7E05 · Trans-3/4-proline-hydroxylase H11 apo structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S5TUM1
- Elsewhere: RCSB PDB 7E05 · PDBe 7E05 · UniProt S5TUM1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.