Research workbench
Cyrstal structure of petase from rhizobacter gummiphilus
Analyse Cyrstal structure of petase from rhizobacter gummiphilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DZT
- Type
- protein
- Length
- 534 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dlh domain-containing protein
- UniProt
- A0A1W6L588
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Dlh domain-containing protein | protein | 267 | 33% helix, 22% strand | A0A1W6L588 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.52 | 0.77 | 29 | empty |
| 2 | 126 | 0.44 | 0.77 | 26 | empty |
| 3 | 58 | 0.28 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 667 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 7DZT · Cyrstal structure of PETase from Rhizobacter gummiphilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1W6L588
- Elsewhere: RCSB PDB 7DZT · PDBe 7DZT · UniProt A0A1W6L588
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