Research workbench
Crystal structure of the computationally designed MSDPBB_SYM2 protein
Analyse Crystal structure of the computationally designed MSDPBB_SYM2 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DWW
- Type
- protein
- Length
- 172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MSDPBB_SYM2 protein
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | MSDPBB_SYM2 protein | protein | 86 | 20% helix, 41% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.52 | 0.80 | 25 | empty |
| 2 | 73 | 0.36 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- B–A · 242 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7DWW · Crystal structure of the computationally designed msDPBB_sym2 protein · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7DWW · PDBe 7DWW
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