Research workbench
Crystal structure of vibrio fischeri darr in complex with DNA reveals the transcriptional activation mechanism of lttr family members
Analyse Crystal structure of vibrio fischeri darr in complex with DNA reveals the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DWO
- Type
- protein
- Length
- 584 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted DNA-binding transcriptional regulator
- UniProt
- Q5E4K6
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Predicted DNA-binding transcriptional regulator | protein | 292 | 43% helix, 23% strand | Q5E4K6 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1091 | 0.80 | 0.81 | 97 | empty |
| 2 | 419 | 0.60 | 0.76 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 1612 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 7DWO · Crystal structure of Vibrio fischeri DarR in complex with DNA reveals the transcriptional… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5E4K6
- Elsewhere: RCSB PDB 7DWO · PDBe 7DWO · UniProt Q5E4K6
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