Research workbench
SARS-cov-2 mpro mutant (H41A) in complex with NSP4|5 peptidyl substrate
Analyse SARS-cov-2 mpro mutant (H41A) in complex with NSP4|5 peptidyl substrate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DVP
- Type
- protein
- Length
- 316 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C-like proteinase; NSP4/5 peptidyl substrate
- EC
- 3.4.22.69
- UniProt
- P0DTD1
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3C-like proteinase (EC 3.4.22.69) | protein | 306 | 24% helix, 29% strand | P0DTD1 |
| C | NSP4/5 peptidyl substrate | protein | 10 | 0% helix, 40% strand | P0DTD1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.34 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–C · 844 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 7DVP · SARS-CoV-2 Mpro mutant (H41A) in complex with nsp4|5 peptidyl substrate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7DVP · PDBe 7DVP · UniProt P0DTD1
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