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Crystal structure of a marr family protein in complex with a lipid- like effector molecule from the psychrophilic bacterium paenisporosarcina sp. tg-14

Analyse Crystal structure of a marr family protein in complex with a lipid- like… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7DVN
Type: protein
Length: 135 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Marr family transcriptional regulator
Ligands: PLM
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Marr family transcriptional regulator	protein	135	74% helix, 4% strand	—

Ligands and binding sites

PLM · Palmitic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	252	0.48	0.73	28	PLM

Compared structures

7DVN · Crystal structure of a MarR family protein in complex with a lipid-like effector molecule… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7DVN · PDBe 7DVN

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