Research workbench
Crystal structure of aspergillus oryzae RIB2 deaminase
Analyse Crystal structure of aspergillus oryzae RIB2 deaminase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DRY
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CMP/DCMP-type deaminase domain-containing protein
- UniProt
- Q2UFA9
- Ligands
- ZN, SO4
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CMP/DCMP-type deaminase domain-containing protein | protein | 186 | 35% helix, 23% strand | Q2UFA9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.43 | 0.83 | 14 | SO4 |
| 2 | 51 | 0.35 | 0.79 | 16 | empty |
Compared structures
- 7DRY · Crystal structure of Aspergillus oryzae Rib2 deaminase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2UFA9
- Elsewhere: RCSB PDB 7DRY · PDBe 7DRY · UniProt Q2UFA9
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