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Structure of SSPE_40224

Analyse Structure of SSPE_40224 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7DRS
Type: protein
Length: 3,084 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sspe protein
UniProt: A0A6I8WFL9
Pockets: 20 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D, A, B, C	Sspe protein	protein	771	50% helix, 7% strand	A0A6I8WFL9

Pockets

20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1037	0.84	0.85	101	empty
2	896	0.82	0.85	96	empty
3	968	0.75	0.78	96	empty
4	328	0.73	0.85	49	empty
5	328	0.70	0.83	37	empty

Interfaces

6 interfaces between chains.

D–A · 2881 Å² buried · 22 hydrogen bonds · protein-protein
B–C · 2877 Å² buried · 21 hydrogen bonds · protein-protein
A–B · 810 Å² buried · 8 hydrogen bonds · protein-protein
D–C · 809 Å² buried · 10 hydrogen bonds · protein-protein
A–C · 52 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

7DRS · Structure of SspE_40224 · the same entry in another collection · chain D against D, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A6I8WFL9
Elsewhere: RCSB PDB 7DRS · PDBe 7DRS · UniProt A0A6I8WFL9

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