Research workbench
Structure of SSPE_CTD_41658
Analyse Structure of SSPE_CTD_41658 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DRI
- Type
- protein
- Length
- 1,872 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DUF1524 domain
- UniProt
- A0A100JVX1
- Pockets
- 20 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 55% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DUF1524 domain | protein | 471 | 55% helix, 3% strand | A0A100JVX1 |
| B | DUF1524 domain | protein | 466 | 54% helix, 3% strand | A0A100JVX1 |
| C | DUF1524 domain | protein | 468 | 56% helix, 3% strand | A0A100JVX1 |
| D | DUF1524 domain | protein | 467 | 53% helix, 3% strand | A0A100JVX1 |
Pockets
20 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.75 | 0.80 | 78 | empty |
| 2 | 541 | 0.74 | 0.82 | 61 | empty |
| 3 | 547 | 0.73 | 0.81 | 67 | empty |
| 4 | 522 | 0.73 | 0.82 | 58 | empty |
| 5 | 906 | 0.72 | 0.77 | 101 | empty |
Interfaces
5 interfaces between chains.
- B–D · 1168 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 1141 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 338 Ų buried · 1 hydrogen bond · protein-protein
- A–B · 111 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 37 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7DRI · Structure of SspE_CTD_41658 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A100JVX1
- Elsewhere: RCSB PDB 7DRI · PDBe 7DRI · UniProt A0A100JVX1
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