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Thermal treated marsupenaeus japonicus ferritin

Analyse Thermal treated marsupenaeus japonicus ferritin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7DQP
Type: protein
Length: 4,056 residues
Chains: 24
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferritin
EC: 1.16.3.1
UniProt: T2B7E1
Pockets: 20 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C, F, A, B, D, E, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Ferritin (EC 1.16.3.1)	protein	169	73% helix, 1% strand	T2B7E1

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1032	0.82	0.83	94	empty
2	974	0.81	0.83	85	empty
3	984	0.81	0.82	95	empty
4	113	0.79	0.97	17	empty
5	97	0.79	0.98	19	empty

Interfaces

50 interfaces between chains.

I–J · 1484 Å² buried · 34 hydrogen bonds · protein-protein
Q–R · 1484 Å² buried · 32 hydrogen bonds · protein-protein
G–H · 1482 Å² buried · 34 hydrogen bonds · protein-protein
M–N · 1482 Å² buried · 30 hydrogen bonds · protein-protein
O–P · 1482 Å² buried · 29 hydrogen bonds · protein-protein

Compared structures

7DQP · Thermal treated Marsupenaeus japonicus ferritin · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt T2B7E1
Elsewhere: RCSB PDB 7DQP · PDBe 7DQP · UniProt T2B7E1

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