Research workbench
Crystal structure of human serum albumin and nitrosylruthenium complex adduct
Analyse Crystal structure of human serum albumin and nitrosylruthenium complex adduct in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DL4
- Type
- protein
- Length
- 581 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serum albumin
- UniProt
- P02768
- Ligands
- PLM, HZQ, RU, CL, NO
- Pockets
- 7 · best druggability 0.88
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serum albumin | protein | 581 | 73% helix, 0% strand | P02768 |
Ligands and binding sites
- PLM · Palmitic acid · ligand · 5 copies · chains A
- HZQ · 5-chloranylquinolin-8-ol · ligand · chains A
- RU · Ruthenium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 7 copies · chains A
- NO · Nitric oxide · ion · 2 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1144 | 0.88 | 0.89 | 111 | DMS, GOL, PLM |
| 2 | 306 | 0.82 | 0.92 | 37 | GOL, PLM |
| 3 | 191 | 0.74 | 0.89 | 28 | PLM |
| 4 | 715 | 0.72 | 0.78 | 64 | RU, HZQ, CL, NO, GOL |
| 5 | 148 | 0.62 | 0.85 | 20 | PLM |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02768
- Elsewhere: RCSB PDB 7DL4 · PDBe 7DL4 · UniProt P02768
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