Research workbench
De novo design protein AM2M
Analyse De novo design protein AM2M in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DKO
- Type
- protein
- Length
- 270 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- De novo designed protein AM2M
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | De novo designed protein AM2M | protein | 90 | 41% helix, 33% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.31 | 0.74 | 16 | empty |
Interfaces
2 interfaces between chains.
- A–C · 470 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 451 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7DKO · De novo design protein AM2M · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7DKO · PDBe 7DKO
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