Research workbench
CLEC4F nanobody 322
Analyse CLEC4F nanobody 322 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DJY
- Type
- protein
- Length
- 491 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CLEC4F nanobody 322
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | CLEC4F nanobody 322 | protein | 123 | 10% helix, 53% strand | — |
| D | CLEC4F nanobody 322 | protein | 122 | 10% helix, 53% strand | — |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 439 | 0.60 | 0.75 | 46 | empty |
| 2 | 272 | 0.54 | 0.76 | 42 | empty |
| 3 | 204 | 0.50 | 0.76 | 38 | empty |
| 4 | 99 | 0.42 | 0.78 | 28 | empty |
| 5 | 59 | 0.27 | 0.74 | 17 | empty |
Interfaces
4 interfaces between chains.
- B–C · 491 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 460 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 388 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 95 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7DJY · Clec4f Nanobody 322 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7DJY · PDBe 7DJY
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