Research workbench
Structure of halothiobacillus neapolitanus microcompartments protein CSOS1D
Analyse Structure of halothiobacillus neapolitanus microcompartments protein CSOS1D in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DHQ
- Type
- protein
- Length
- 1,227 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Microcompartments protein
- UniProt
- D0KZ73
- Pockets
- 15 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E | Microcompartments protein | protein | 205 | 39% helix, 29% strand | D0KZ73 |
| C, D, F | Microcompartments protein | protein | 204 | 41% helix, 29% strand | D0KZ73 |
Pockets
15 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 708 | 0.74 | 0.80 | 87 | empty |
| 2 | 656 | 0.70 | 0.78 | 76 | empty |
| 3 | 72 | 0.70 | 0.95 | 18 | empty |
| 4 | 105 | 0.64 | 0.89 | 18 | empty |
| 5 | 341 | 0.61 | 0.78 | 34 | empty |
Interfaces
15 interfaces between chains.
- A–B · 1058 Ų buried · 17 hydrogen bonds · protein-protein
- E–F · 1016 Ų buried · 10 hydrogen bonds · protein-protein
- D–E · 957 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 952 Ų buried · 13 hydrogen bonds · protein-protein
- C–F · 947 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 7DHQ · Structure of Halothiobacillus neapolitanus Microcompartments Protein CsoS1D · the same entry in another collection · chain F against F, TM-score 1.00
- D0KZ73 · AlphaFold monomer V2.0 prediction for carboxysome shell protein CSOS1D (D0KZ73) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0KZ73
- Elsewhere: RCSB PDB 7DHQ · PDBe 7DHQ · UniProt D0KZ73
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