Research workbench
Crystal structure of an acetyl xylan esterase alaxease
Analyse Crystal structure of an acetyl xylan esterase alaxease in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DDY
- Type
- protein
- Length
- 796 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- G-D-S-L family lipolytic protein
- UniProt
- A0A2Z4G9P0
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 3 distinct chains · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | G-D-S-L family lipolytic protein | protein | 198 | 51% helix, 14% strand | A0A2Z4G9P0 |
| A, C | G-D-S-L family lipolytic protein | protein | 199 | 51% helix, 15% strand | A0A2Z4G9P0 |
| B | G-D-S-L family lipolytic protein | protein | 200 | 50% helix, 15% strand | A0A2Z4G9P0 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 788 | 0.69 | 0.76 | 79 | empty |
| 2 | 694 | 0.68 | 0.77 | 55 | empty |
| 3 | 174 | 0.50 | 0.78 | 24 | empty |
Interfaces
5 interfaces between chains.
- B–C · 779 Ų buried · 15 hydrogen bonds · protein-protein
- D–C · 476 Ų buried · 6 hydrogen bonds · protein-protein
- D–A · 289 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 240 Ų buried · 4 hydrogen bonds · protein-protein
- D–B · 34 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7DDY · Crystal structure of an acetyl xylan esterase AlAXEase · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2Z4G9P0
- Elsewhere: RCSB PDB 7DDY · PDBe 7DDY · UniProt A0A2Z4G9P0
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