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Ancestral myoglobin ambsp of puijila darwini relative (imidazol ligand)

Analyse Ancestral myoglobin ambsp of puijila darwini relative (imidazol ligand) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7DDR
Type: protein
Length: 154 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ancestral myoglobin ambsp
Ligands: HEM
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ancestral myoglobin ambsp	protein	154	77% helix, 1% strand	—

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
IMD · Imidazole · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	272	0.69	0.84	27	HEM, IMD

Compared structures

7DDR · Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7DDR · PDBe 7DDR

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