Research workbench
The crystal structure of arms-PBM/MAGI2-PDZ4
Analyse The crystal structure of arms-PBM/MAGI2-PDZ4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7D6F
- Type
- protein
- Length
- 96 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane-associated guanylate kinase, ww and PDZ domain- containing protein 2; Kinase…
- UniProt
- Q9WVQ1, Q9EQG6
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane-associated guanylate kinase, ww and PDZ domain- containing protein 2 | protein | 87 | 16% helix, 30% strand | Q9WVQ1 |
| B | Kinase D-interacting substrate of 220 kda | protein | 9 | 0% helix, 44% strand | Q9EQG6 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 456 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7D6F · The crystal structure of ARMS-PBM/MAGI2-PDZ4 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9WVQ1 · AlphaFold monomer V2.0 prediction for membrane-associated guanylate kinase, ww and PDZ… · a predicted model of the same protein · chain A against A, TM-score 0.94
- Q9EQG6 · AlphaFold monomer V2.0 prediction for kinase D-interacting substrate of 220 kda (Q9EQG6) · a predicted model of the same protein · chain B against A, TM-score 0.47
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WVQ1
- Every structure of UniProt Q9EQG6
- Elsewhere: RCSB PDB 7D6F · PDBe 7D6F · UniProt Q9WVQ1 · UniProt Q9EQG6
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