Research workbench
The crystal structure of semet patatin
Analyse The crystal structure of semet patatin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1OXW
- Type
- protein
- Length
- 1,081 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Patatin
- UniProt
- Q8LPW4
- Pockets
- 13 · best druggability 0.74
Structure
x-ray diffraction · 3 distinct chains · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Patatin | protein | 360 | 48% helix, 16% strand | Q8LPW4 |
| B | Patatin | protein | 359 | 48% helix, 17% strand | Q8LPW4 |
| C | Patatin | protein | 362 | 49% helix, 17% strand | Q8LPW4 |
Pockets
13 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 998 | 0.74 | 0.77 | 85 | empty |
| 2 | 464 | 0.60 | 0.75 | 51 | empty |
| 3 | 135 | 0.58 | 0.84 | 38 | empty |
| 4 | 137 | 0.58 | 0.83 | 38 | empty |
| 5 | 250 | 0.56 | 0.77 | 29 | empty |
Interfaces
3 interfaces between chains.
- B–C · 364 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 216 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 62 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 34 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8LPW4
- Elsewhere: RCSB PDB 1OXW · PDBe 1OXW · UniProt Q8LPW4
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