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Crystal structure of bacteroides thetaiotaomicron glutaminyl cyclase bound to 1-benzylimidazole

Analyse Crystal structure of bacteroides thetaiotaomicron glutaminyl cyclase bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7D1D
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glutamine cyclotransferase
UniProt: A0A679HSW5
Ligands: 1BN, ZN
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glutamine cyclotransferase	protein	294	37% helix, 19% strand	A0A679HSW5

Ligands and binding sites

1BN · 1-benzyl-1H-imidazole · ligand · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.45	0.79	18	1BN

Compared structures

7D1D · Crystal structure of Bacteroides thetaiotaomicron glutaminyl cyclase bound to… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A679HSW5
Elsewhere: RCSB PDB 7D1D · PDBe 7D1D · UniProt A0A679HSW5

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