Research workbench

Solution structure of a wkry DNA-binding domain

Analyse Solution structure of a wkry DNA-binding domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7D11
Type: protein
Length: 79 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Wrky transcription factor 1
UniProt: Q9SI37
Ligands: ZN
Pockets: 2 · best druggability 0.42

Structure

solution nmr · 1 distinct chain · 0% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Wrky transcription factor 1	protein	79	0% helix, 39% strand	Q9SI37

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	103	0.42	0.77	21	empty
2	60	0.27	0.73	15	empty

Compared structures

7D11 · Solution structure of a WKRY DNA-binding domain · the same entry in another collection · chain A against A, TM-score 1.00
Q9SI37 · AlphaFold monomer V2.0 prediction for wrky transcription factor 1 (Q9SI37) · a predicted model of the same protein · chain A against A, TM-score 0.62

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9SI37
Elsewhere: RCSB PDB 7D11 · PDBe 7D11 · UniProt Q9SI37

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.