Research workbench

Iclr transcription factor complexed with 4-hydroxybenzoic acid from microbacterium hydrocarbonoxydans

Analyse Iclr transcription factor complexed with 4-hydroxybenzoic acid from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7CUO
Type: protein
Length: 480 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcription factor
Ligands: PHB, SO4
Pockets: 5 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcription factor	protein	241	44% helix, 22% strand	—
B	Transcription factor	protein	239	46% helix, 23% strand	—

Ligands and binding sites

PHB · P-hydroxybenzoic acid · ligand · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 8 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.73	0.99	22	PHB
2	55	0.72	0.99	22	PHB
3	496	0.64	0.76	53	SO4
4	450	0.60	0.75	42	empty
5	226	0.48	0.74	26	empty

Interfaces

1 interface between chains.

A–B · 2400 Å² buried · 27 hydrogen bonds · protein-protein

Compared structures

7CUO · IclR transcription factor complexed with 4-hydroxybenzoic acid from Microbacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7CUO · PDBe 7CUO

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.