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Structure of a gg mismatch-containing duplex formed by G4C2 repeats

Analyse Structure of a gg mismatch-containing duplex formed by G4C2 repeats in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7CUK
Type: DNA
Length: 22 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (11-mer)
Pockets: 1 · best druggability 0.28

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (11-mer)	dna	11	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.28	0.72	14	empty

Interfaces

1 interface between chains.

A–B · 463 Å² buried · 43 hydrogen bonds · nucleic-nucleic

Compared structures

7CUK · Structure of a GG mismatch-containing duplex formed by G4C2 repeats · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7CUK · PDBe 7CUK

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