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Crystal structure of apo cmob from vibrio vulnificus

Analyse Crystal structure of apo cmob from vibrio vulnificus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7CT8
Type: protein
Length: 654 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA U34 carboxymethyltransferase
EC: 2.5.1.-
UniProt: A0A087JHK9
Pockets: 4 · best druggability 0.66

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA U34 carboxymethyltransferase (EC 2.5.1.-)	protein	330	32% helix, 25% strand	A0A087JHK9
B	TRNA U34 carboxymethyltransferase (EC 2.5.1.-)	protein	324	31% helix, 24% strand	A0A087JHK9

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	375	0.66	0.79	45	empty
2	464	0.63	0.76	47	empty
3	98	0.42	0.78	21	empty
4	96	0.38	0.76	19	empty

Interfaces

1 interface between chains.

A–B · 966 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

7CT8 · Crystal structure of apo CmoB from Vibrio Vulnificus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A087JHK9
Elsewhere: RCSB PDB 7CT8 · PDBe 7CT8 · UniProt A0A087JHK9

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