Research workbench
Crystal structure of gcl from deinococcus metallilatus
Analyse Crystal structure of gcl from deinococcus metallilatus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7CT6
- Type
- protein
- Length
- 1,116 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glyoxylate carboligase
- EC
- 4.1.1.47
- UniProt
- A0A5R8UVM6
- Pockets
- 7 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glyoxylate carboligase (EC 4.1.1.47) | protein | 558 | 38% helix, 16% strand | A0A5R8UVM6 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1136 | 0.86 | 0.87 | 125 | empty |
| 2 | 1033 | 0.82 | 0.83 | 97 | empty |
| 3 | 299 | 0.76 | 0.88 | 44 | empty |
| 4 | 227 | 0.48 | 0.74 | 37 | empty |
| 5 | 147 | 0.46 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 644 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 38 modified (engineered).
Compared structures
- 7CT6 · Crystal structure of GCL from Deinococcus metallilatus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5R8UVM6
- Elsewhere: RCSB PDB 7CT6 · PDBe 7CT6 · UniProt A0A5R8UVM6
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