Research workbench
Crystal structure of puf-8 in complex with pbe-RNA
Analyse Crystal structure of puf-8 in complex with pbe-RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7CGM
- Type
- protein + RNA
- Length
- 357 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pum-hd domain-containing protein; Pbe-5U (5'-R(P*UP*GP*UP*AP*UP*AP*UP*A)-3')
- UniProt
- Q09487
- Ligands
- CL
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pum-hd domain-containing protein | protein | 349 | 75% helix, 0% strand | Q09487 |
| B | Pbe-5U (5'-R(P*UP*GP*UP*AP*UP*AP*UP*A)-3') | rna | 8 | — | — |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1439 Ų buried · 48 hydrogen bonds · protein-nucleic
Compared structures
- 7CGM · Crystal Structure of PUF-8 in Complex with PBE-RNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09487
- Elsewhere: RCSB PDB 7CGM · PDBe 7CGM · UniProt Q09487
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