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Crystal structure of ybea CP74 W72F
Analyse Crystal structure of ybea CP74 W72F in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7CF7
- Type
- protein
- Length
- 291 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal RNA large subunit methyltransferase H,RIBOSOMAL RNA large subunit…
- EC
- 2.1.1.177
- UniProt
- P0A8I8
- Pockets
- 3 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA large subunit methyltransferase H,RIBOSOMAL RNA large subunit methyltransferase H (EC 2.1.1.177) | protein | 148 | 46% helix, 18% strand | P0A8I8 |
| B | Ribosomal RNA large subunit methyltransferase H,RIBOSOMAL RNA large subunit methyltransferase H (EC 2.1.1.177) | protein | 143 | 39% helix, 20% strand | P0A8I8 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.38 | 0.75 | 23 | empty |
| 2 | 55 | 0.37 | 0.79 | 12 | empty |
| 3 | 65 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 4424 Ų buried · 69 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8I8
- Elsewhere: RCSB PDB 7CF7 · PDBe 7CF7 · UniProt P0A8I8
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