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Crystal structure of the transcriptional regulator padr from bacillus subtilis (space group H32)

Analyse Crystal structure of the transcriptional regulator padr from bacillus subtilis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7CBV
Type: protein
Length: 333 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Padr family transcriptional regulator
UniProt: A0A5F2KJ26
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 68% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Padr family transcriptional regulator	protein	167	68% helix, 6% strand	A0A5F2KJ26
B	Padr family transcriptional regulator	protein	166	67% helix, 5% strand	A0A5F2KJ26

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	233	0.51	0.75	25	empty
2	239	0.49	0.74	22	empty
3	63	0.36	0.78	11	empty

Interfaces

1 interface between chains.

A–B · 538 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

7CBV · Crystal structure of the transcriptional regulator PadR from Bacillus subtilis (space… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A5F2KJ26
Elsewhere: RCSB PDB 7CBV · PDBe 7CBV · UniProt A0A5F2KJ26

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