Research workbench
Echovirus 30 E-particle
Analyse Echovirus 30 E-particle in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C9U
- Type
- protein
- Length
- 727 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1; VP0; VP3
- Pockets
- 9 · best druggability 0.63
Structure
electron microscopy · 3 distinct chains · 6% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 228 | 5% helix, 32% strand | — |
| B | VP0 | protein | 261 | 7% helix, 33% strand | — |
| C | VP3 | protein | 238 | 6% helix, 29% strand | — |
Pockets
9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 305 | 0.63 | 0.80 | 52 | empty |
| 2 | 203 | 0.45 | 0.73 | 31 | empty |
| 3 | 92 | 0.44 | 0.80 | 19 | empty |
| 4 | 77 | 0.41 | 0.79 | 18 | empty |
| 5 | 78 | 0.41 | 0.79 | 18 | empty |
Interfaces
3 interfaces between chains.
- A–C · 3484 Ų buried · 51 hydrogen bonds · protein-protein
- A–B · 2203 Ų buried · 36 hydrogen bonds · protein-protein
- B–C · 1976 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 7C9U · Echovirus 30 E-particle · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C9U · PDBe 7C9U
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