Research workbench
Echovirus 30 a-particle
Analyse Echovirus 30 a-particle in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C9T
- Type
- protein
- Length
- 721 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1; VP2; VP3
- Pockets
- 11 · best druggability 0.65
Structure
electron microscopy · 3 distinct chains · 9% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 241 | 9% helix, 33% strand | — |
| B | VP2 | protein | 247 | 9% helix, 37% strand | — |
| C | VP3 | protein | 233 | 9% helix, 35% strand | — |
Pockets
11 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 175 | 0.65 | 0.85 | 25 | empty |
| 2 | 253 | 0.54 | 0.76 | 46 | empty |
| 3 | 62 | 0.48 | 0.85 | 20 | empty |
| 4 | 81 | 0.42 | 0.80 | 17 | empty |
| 5 | 74 | 0.35 | 0.76 | 18 | empty |
Interfaces
3 interfaces between chains.
- A–C · 3797 Ų buried · 53 hydrogen bonds · protein-protein
- A–B · 1719 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 1523 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 7C9T · Echovirus 30 A-particle · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C9T · PDBe 7C9T
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