Research workbench
Hybrid designing of potent inhibitors of striga strigolactone receptor SHHTL7
Analyse Hybrid designing of potent inhibitors of striga strigolactone receptor SHHTL7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C8L
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hyposensitive to light 7
- UniProt
- A0A0M3PNA2
- Ligands
- EGC, FP6, SO4
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hyposensitive to light 7 | protein | 268 | 47% helix, 18% strand | A0A0M3PNA2 |
Ligands and binding sites
- EGC · 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-tetramethyl-butyl)-phenoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethanol · ligand · chains A
- FP6 · pyrrolidine-1-carbaldehyde · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 306 | 0.78 | 0.89 | 35 | EGC, FP6 |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 7C8L · Hybrid designing of potent inhibitors of Striga strigolactone receptor ShHTL7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M3PNA2
- Elsewhere: RCSB PDB 7C8L · PDBe 7C8L · UniProt A0A0M3PNA2
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