Research workbench
Crystal structure of germination protease from the spore-forming bacterium paenisporosarcina sp. tg-20 in its inactive form
Analyse Crystal structure of germination protease from the spore-forming bacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C4X
- Type
- protein
- Length
- 664 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Germination protease
- Pockets
- 7 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Germination protease | protein | 343 | 47% helix, 19% strand | — |
| B | Germination protease | protein | 321 | 48% helix, 20% strand | — |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 357 | 0.55 | 0.74 | 52 | empty |
| 2 | 155 | 0.50 | 0.79 | 23 | empty |
| 3 | 142 | 0.48 | 0.78 | 25 | empty |
| 4 | 164 | 0.44 | 0.75 | 25 | empty |
| 5 | 139 | 0.42 | 0.75 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 2083 Ų buried · 37 hydrogen bonds · protein-protein
Compared structures
- 7C4X · Crystal structure of germination protease from the spore-forming bacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C4X · PDBe 7C4X
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.