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Dithiol CGRX1

Analyse Dithiol CGRX1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7C10
Type: protein
Length: 369 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glutaredoxin
UniProt: A8MIN3
Pockets: 5 · best druggability 0.57

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Glutaredoxin	protein	75	36% helix, 23% strand	A8MIN3
B, D, E	Glutaredoxin	protein	73	37% helix, 25% strand	A8MIN3

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.57	0.91	23	empty
2	62	0.41	0.81	22	empty
3	129	0.39	0.74	20	empty
4	60	0.31	0.76	11	empty
5	67	0.29	0.73	17	empty

Interfaces

7 interfaces between chains.

A–B · 602 Å² buried · 9 hydrogen bonds · protein-protein
D–E · 595 Å² buried · 8 hydrogen bonds · protein-protein
A–D · 541 Å² buried · 4 hydrogen bonds · protein-protein
B–C · 507 Å² buried · 5 hydrogen bonds · protein-protein
A–E · 189 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

7C10 · Dithiol cGrx1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A8MIN3
Elsewhere: RCSB PDB 7C10 · PDBe 7C10 · UniProt A8MIN3

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