Research workbench
Toxin-antitoxin complex from klebsiella pneumoniae
Analyse Toxin-antitoxin complex from klebsiella pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BY2
- Type
- protein
- Length
- 150 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copg family transcriptional regulator; Ribonuclease vapc
- EC
- 3.1.-.-
- UniProt
- W9BQC4, A0A0W8AM92
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 53% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copg family transcriptional regulator | protein | 30 | 43% helix, 0% strand | W9BQC4 |
| B | Ribonuclease vapc (EC 3.1.-.-) | protein | 120 | 56% helix, 12% strand | A0A0W8AM92 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.58 | 0.85 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 735 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 7BY2 · Toxin-antitoxin complex from Klebsiella pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W9BQC4
- Every structure of UniProt A0A0W8AM92
- Elsewhere: RCSB PDB 7BY2 · PDBe 7BY2 · UniProt W9BQC4 · UniProt A0A0W8AM92
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