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Cryo-EM structure of the human pathogen mycoplasma pneumoniae P1

Analyse Cryo-EM structure of the human pathogen mycoplasma pneumoniae P1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BWM
Type: protein
Length: 1,219 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adhesin P1
UniProt: P11311
Pockets: 18 · best druggability 0.76

Structure

electron microscopy · 1 distinct chain · 19% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adhesin P1	protein	1219	19% helix, 19% strand	P11311

Pockets

18 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1009	0.76	0.79	84	empty
2	458	0.69	0.80	34	empty
3	53	0.65	0.95	17	empty
4	280	0.64	0.81	39	empty
5	365	0.64	0.79	30	empty

Compared structures

7BWM · Cryo-EM structure of the human pathogen Mycoplasma pneumoniae P1 · the same entry in another collection · chain A against A, TM-score 1.00
P11311 · AlphaFold monomer V2.0 prediction for adhesin P1 (P11311) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11311
Elsewhere: RCSB PDB 7BWM · PDBe 7BWM · UniProt P11311

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