Research workbench
Anthranilate synthase component I (TRPE)[MYCOLICIBACTERIUM smegmatis]
Analyse Anthranilate synthase component I (TRPE)[MYCOLICIBACTERIUM smegmatis] in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BVD
- Type
- protein
- Length
- 994 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Anthranilate synthase component 1
- EC
- 4.1.3.27
- UniProt
- A0A0D6I7M8
- Ligands
- BEZ, PYR, MG
- Pockets
- 13 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Anthranilate synthase component 1 (EC 4.1.3.27) | protein | 499 | 30% helix, 32% strand | A0A0D6I7M8 |
| B | Anthranilate synthase component 1 (EC 4.1.3.27) | protein | 495 | 29% helix, 32% strand | A0A0D6I7M8 |
Ligands and binding sites
- BEZ · Benzoic acid · ligand · 2 copies · chains A, B
- PYR · Pyruvic acid · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.78 | 0.98 | 35 | empty |
| 2 | 793 | 0.76 | 0.80 | 56 | BEZ, MG |
| 3 | 590 | 0.74 | 0.81 | 53 | BEZ, MG |
| 4 | 72 | 0.72 | 0.96 | 21 | empty |
| 5 | 64 | 0.69 | 0.96 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1951 Ų buried · 35 hydrogen bonds · protein-protein
Compared structures
- 7BVD · Anthranilate synthase component I (TrpE)[Mycolicibacterium smegmatis] · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6I7M8
- Elsewhere: RCSB PDB 7BVD · PDBe 7BVD · UniProt A0A0D6I7M8
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