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Mature bacteriorphage T7 tail nozzle protein GP12

Analyse Mature bacteriorphage T7 tail nozzle protein GP12 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BOY
Type: protein
Length: 4,740 residues
Chains: 6
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tail tubular protein GP12
UniProt: P03747
Pockets: 20 · best druggability 0.83

Structure

electron microscopy · 1 distinct chain · 4% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
s, t, u, v, w, x	Tail tubular protein GP12	protein	790	4% helix, 28% strand	P03747

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	494	0.83	0.89	87	empty
2	1152	0.82	0.83	160	empty
3	499	0.81	0.88	84	empty
4	464	0.80	0.88	77	empty
5	782	0.80	0.84	107	empty

Interfaces

6 interfaces between chains.

u–v · 4339 Å² buried · 49 hydrogen bonds · protein-protein
s–t · 4112 Å² buried · 39 hydrogen bonds · protein-protein
s–x · 4052 Å² buried · 36 hydrogen bonds · protein-protein
w–x · 3932 Å² buried · 26 hydrogen bonds · protein-protein
t–u · 3857 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

7BOY · Mature bacteriorphage t7 tail nozzle protein gp12 · the same entry in another collection · chain s against s, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03747
Elsewhere: RCSB PDB 7BOY · PDBe 7BOY · UniProt P03747

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