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GP8 of mature bacteriophage T7

Analyse GP8 of mature bacteriophage T7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BOU
Type: protein
Length: 6,300 residues
Chains: 12
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Portal protein
UniProt: P03728
Pockets: 20 · best druggability 0.89

Structure

electron microscopy · 1 distinct chain · 46% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Portal protein	protein	525	46% helix, 11% strand	P03728

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	680	0.89	0.94	105	empty
2	593	0.87	0.93	81	empty
3	329	0.84	0.94	57	empty
4	320	0.83	0.94	56	empty
5	958	0.83	0.84	85	empty

Interfaces

23 interfaces between chains.

F–G · 6041 Å² buried · 65 hydrogen bonds · protein-protein
D–E · 6018 Å² buried · 65 hydrogen bonds · protein-protein
A–B · 5970 Å² buried · 67 hydrogen bonds · protein-protein
C–D · 5953 Å² buried · 62 hydrogen bonds · protein-protein
J–K · 5950 Å² buried · 63 hydrogen bonds · protein-protein

Compared structures

7BOU · GP8 of Mature Bacteriophage T7 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03728
Elsewhere: RCSB PDB 7BOU · PDBe 7BOU · UniProt P03728

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