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Exo-beta-1,4-mannosidase OP5MAN5 from opitutaceae bacterium strain TAV5

Analyse Exo-beta-1,4-mannosidase OP5MAN5 from opitutaceae bacterium strain TAV5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BOB
Type: protein
Length: 1,687 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-beta-mannanase
UniProt: W0J1H8
Pockets: 15 · best druggability 0.69

Structure

x-ray diffraction · 3 distinct chains · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-beta-mannanase	protein	564	37% helix, 21% strand	W0J1H8
B	Endo-beta-mannanase	protein	563	38% helix, 21% strand	W0J1H8
C	Endo-beta-mannanase	protein	560	39% helix, 21% strand	W0J1H8

Pockets

15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	555	0.69	0.78	72	empty
2	571	0.69	0.78	71	empty
3	311	0.62	0.79	34	empty
4	133	0.59	0.84	29	empty
5	212	0.54	0.78	44	empty

Interfaces

3 interfaces between chains.

A–C · 1210 Å² buried · 24 hydrogen bonds · protein-protein
A–B · 1188 Å² buried · 18 hydrogen bonds · protein-protein
B–C · 1167 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

7BOB · Exo-beta-1,4-mannosidase Op5Man5 from Opitutaceae bacterium strain TAV5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W0J1H8
Elsewhere: RCSB PDB 7BOB · PDBe 7BOB · UniProt W0J1H8

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