Research workbench
Complex of rice blast (magnaporthe oryzae) effector protein avr-pikd with a predicted ancestral hma domain of pik-1 from oryza spp.
Analyse Complex of rice blast (magnaporthe oryzae) effector protein avr-pikd with a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BNT
- Type
- protein
- Length
- 230 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C4B8B8
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 71 | — | — |
| B | — | protein | 75 | — | — |
| C | — | protein | 84 | — | C4B8B8 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7BNT · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with a predicted… · the same entry in another collection · chain C against C, TM-score 1.00
- 5A6W · Complex of rice blast (magnaporthe oryzae) effector protein avr-pikd with the hma domain… · an experimental structure of the same protein · chain C against C, TM-score 0.98
- 5A6W · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with the HMA domain… · an experimental structure of the same protein · chain C against C, TM-score 0.98
- 6FU9 · Complex of rice blast (magnaporthe oryzae) effector protein avr-pikd with the hma domain… · an experimental structure of the same protein · chain C against B, TM-score 0.97
- 6FU9 · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with the HMA domain… · an experimental structure of the same protein · chain C against B, TM-score 0.97
- 6R8K · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with an engineered… · an experimental structure of the same protein · chain C against C, TM-score 0.96
- 6R8K · Complex of rice blast (magnaporthe oryzae) effector protein avr-pikd with an engineered… · an experimental structure of the same protein · chain C against C, TM-score 0.96
- 8B2R · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a rice (Oryza… · an experimental structure of the same protein · chain C against B, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4B8B8
- Elsewhere: RCSB PDB 7BNT · PDBe 7BNT · UniProt C4B8B8 · AlphaFold DB C4B8B8
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