Research workbench
Crystal structure of bacillus subtilis penicillin binding protein 3
Analyse Crystal structure of bacillus subtilis penicillin binding protein 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BN9
- Type
- protein
- Length
- 1,208 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein 3
- EC
- 3.4.16.4
- UniProt
- P42971
- Pockets
- 12 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 3 (EC 3.4.16.4) | protein | 630 | 33% helix, 26% strand | P42971 |
| B | Penicillin-binding protein 3 (EC 3.4.16.4) | protein | 578 | 33% helix, 20% strand | P42971 |
Pockets
12 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1132 | 0.77 | 0.79 | 83 | empty |
| 2 | 897 | 0.69 | 0.75 | 86 | empty |
| 3 | 53 | 0.56 | 0.90 | 24 | empty |
| 4 | 227 | 0.49 | 0.75 | 30 | empty |
| 5 | 171 | 0.47 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 884 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 7BN9 · Crystal Structure of Bacillus subtilis Penicillin Binding Protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
- P42971 · AlphaFold monomer V2.0 prediction for penicillin-binding protein 3 (P42971) · a predicted model of the same protein · chain B against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42971
- Elsewhere: RCSB PDB 7BN9 · PDBe 7BN9 · UniProt P42971
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.