Research workbench
Ag repetition attached to an extended I-motif clip at 3'-end
Analyse Ag repetition attached to an extended I-motif clip at 3'-end in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BMA
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AGAG(CH+)C(5MECH+); AGAGC(CH+)(5MEC)
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | AGAG(CH+)C(5MECH+) | dna | 7 | — | — |
| B, D | AGAGC(CH+)(5MEC) | dna | 7 | — | — |
Interfaces
6 interfaces between chains.
- A–B · 473 Ų buried · 34 hydrogen bonds · nucleic-nucleic
- C–D · 440 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- B–D · 293 Ų buried · 6 hydrogen bonds · nucleic-nucleic
- B–C · 292 Ų buried · 11 hydrogen bonds · nucleic-nucleic
- A–D · 282 Ų buried · 15 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 8 modified (nucleotide modification).
Compared structures
- 7BMA · AG repetition attached to an extended i-motif clip at 3'-end · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7BMA · PDBe 7BMA
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.